Category: Audits

5 Grant Budget Examples to Supercharge Your Funding

While your proposal narrative captures the heart of the reviewer, your grant budget captures their brain. It’s the first place reviewers look to test whether your plan makes financial sense. 

In other words, a beautifully written narrative can still lose out to a more modest proposal if that other application backs up every claim with a grounded, transparent, and compliant budget. In competitive cycles, reviewers often use the budget as a tiebreaker, awarding points for clarity, completeness, and adherence to funder rules on direct, indirect, and unallowable costs. 

In grant writing, a strong, transparent budget shows that your organization not only dreams big but also operates with discipline. It reassures funders that your team understands federal cost principles, can manage different categories such as personnel, fringe benefits, travel, equipment, and contractual expenses, and will be able to report back on spending without surprises. This guide goes beyond definitions to show five distinct, real-world budget structures and seven actionable best practices that prove your organization’s financial stability and impact.

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Grant Budget FAQs

What is a grant budget?

A grant budget is the financial translation of your project’s scope of work. It’s not simply math; it’s a credibility document that demonstrates you understand what resources it will take to fulfill your mission. 

Once approved, the budget effectively becomes a contract. You are legally obligated to spend the awarded funds as outlined (within reasonable variance). For this reason, accuracy and realism are key. Federal agencies and many private funders treat your approved budget as part of the official award; significant shifts often require prior written approval, especially if you move funds between major categories like personnel, equipment, or contractual services. This is why seasoned grant professionals build in realistic assumptions from the start.

A strong grant budget also:

  • Sets internal expectations for your team about staffing levels, timelines, and output.
  • Serves as the baseline for financial reporting and monitoring once the grant is active.
  • Helps leadership assess whether a proposed grant is actually feasible or would stretch capacity too thin.

Treat the budget as a management tool that lives beyond submission day, not just a form you complete to satisfy the application. 

What are the components of a grant budget?

Most federal and private grant budgets share a similar core structure. These categories may be presented in slightly different ways depending on the funder’s format, but the underlying logic remains consistent:

The components of a grant budget (as explained below)

  • Personnel (Salaries and Wages): Payments to staff directly working on the project.
  • Fringe Benefits: Payroll costs such as healthcare, retirement, or paid time off.
  • Travel: Flights, lodging, mileage, and per diems tied to project activities.
  • Equipment: Tangible assets with a unit cost typically over $5,000 and a useful life of more than one year.
  • Supplies: Consumable, lower-cost materials like office items or lab reagents.
  • Contractual (Consultants or Subawards): Payments to external experts or partner organizations.
  • Indirect Costs: Administrative and facility costs supporting operations (e.g., utilities, accounting, or executive oversight).

Many federal forms (such as SF-424 and related supplements) also include “Other” or “Construction” categories, which may capture items like facility rentals, participant incentives, or renovation costs that don’t fit neatly into standard lines. In every case, the funder’s instructions will define which costs belong where and whether certain items are allowable, restricted, or capped.​ For example:

  • A computer might be considered “equipment” under one program (if over $5,000 per unit) but “supplies” under another with a different capitalization threshold.​
  • A part-time administrative assistant could be charged as a direct personnel cost if dedicated specifically to the project and explicitly approved, but otherwise would normally fall under indirect costs.​

Funders often provide a mandatory template or budget form; always follow it exactly. Consistency between your budget forms and your internal accounting systems can also make post-award management much simpler. 

What is the difference between direct and indirect costs?

The differences between direct and indirect costs, as explained below.

Direct costs are expenses tied entirely to the specific project. They answer the question: Would this cost exist if this project didn’t? Some examples include:

  • The project manager’s salary (if dedicated fully to the grant).
  • Workshop materials for program participants.
  • Bus rentals for field trips.

Indirect costs, often referred to as “overhead” or “Facilities & Administrative (F&A) costs,” are shared organizational expenses that keep everything running — think leadership salaries, rent, insurance, or audit fees.

In federal guidance, direct costs are those that can be specifically identified with a particular project “with a high degree of accuracy,” while indirect costs are necessary for joint objectives and cannot be easily broken out. Many organizations develop a Negotiated Indirect Cost Rate Agreement (NICRA) with a federal agency, which sets an official rate and defines the base (such as Modified Total Direct Costs) to which that rate applies. This matters because some costs, like equipment over $5,000 or the portion of subawards over $25,000, may be excluded from the base before the indirect rate is applied.​

Pro Tip: Check the funder’s specific Indirect Cost Rate cap before applying. Some federal grants allow a negotiated rate above 20%, but many private foundations limit indirects to 10–15%. If your negotiated rate is higher than the cap, you will need to decide whether your organization can afford to contribute the excess as cost share or whether to pursue different opportunities. 

What is a grant budget justification?

Your budget justification is the story behind the numbers. It’s the narrative that explains why each cost exists and how it supports your goals. A detailed justification prevents reviewers from assuming your expenses are inflated or unnecessary.

A strong justification typically:

  • Follows the same order and categories as the budget form (personnel, fringe, travel, etc.).
  • Explains how each line item is necessary to accomplish the aims of the project.
  • Shows how you calculated the costs (hours, rates, quantities, travel assumptions).

​For example, when justifying local travel, you might specify: number of trips, average miles per trip, mileage rate, and which staff will travel and why that travel matters for outreach or data collection. Likewise, a personnel justification would reference titles, roles, and level of effort (e.g., 0.25 FTE Program Manager) to align with what is described in the narrative.

When reviewers understand the reason behind costs, they can more easily connect the numbers to the project’s outcomes and judge whether your estimates are reasonable and necessary. 

5 Distinct Grant Budget Examples

Below are five sample layouts illustrating how budgets differ depending on funding purpose. Each table follows a consistent, scannable format: Category | Item | Amount, with totals highlighted for quick review.

These examples are simplified to show structure rather than full, multi-page budgets. In your own proposals, you may need to expand each category into multiple lines, attach a multi-year summary, or upload a separate spreadsheet following the funder’s template. The key is to maintain internal logic: if an activity appears anywhere in your work plan, there should be a corresponding cost in one of these tables and an explanation in your budget narrative.

1. The Restricted Project Budget

This budget supports a specific, time-bound initiative, such as a “2025 Youth Literacy Summer Camp.” All income and expenses are isolated to this project, and no shared or organizational costs are  included.

CategoryItemAmount
PersonnelCamp Counselors (4 x 8 weeks)$28,800.00
SuppliesReading Materials and Workbooks$4,200.00
TravelBus Rentals for Field Trips$3,500.00
EquipmentPortable Classroom Supplies$2,000.00
Indirect Costs (10%)Administrative Support$3,850.00
Total$42,350.00
Cost per participant$42,350 ÷ 50 students = $847.00 each

Including a cost-per-participant metric communicates efficiency and value to reviewers,  a proven tactic for youth and workforce development grants. It also gives you a quick internal benchmark when comparing different program models or when a funder asks what it costs to “serve one additional participant.” If you can show how incremental dollars translate into more seats, more sessions, or better outcomes, you make the funding decision much easier.

2. The General Operating Budget

This format supports unrestricted funding, the holy grail of philanthropy. Instead of isolating a single program, it captures your organization’s overall operations and infrastructure.

CategoryItemAmount
PersonnelExecutive Director, Program Directors, Support Staff$220,000.00
Fringe BenefitsHealth and Retirement Contributions$44,000.00
Rent and UtilitiesOffice Space and Maintenance$36,000.00
Software and SystemsCRM, Fundraising Platform$12,500.00
InsuranceGeneral Liability and D&O$6,000.00
DevelopmentMarketing and Donor Events$8,500.00
Total$327,000.00

Frame these costs as infrastructure, not overhead. Sustainable operations are what allow great programs to exist in the first place. When preparing general operating budgets, many nonprofits break out “Core Mission Support” to highlight how functions like fundraising, HR, finance, and IT directly underpin program delivery. This repositioning helps combat the outdated “overhead myth” and educates funders on why paying the electric bill and maintaining secure data systems are essential to impact.​

If a funder allows only a portion of your full operating budget to be covered, you can use this format to show how their grant fills a specific gap, such as leadership continuity or technology modernization, without pretending those costs are disconnected from your mission. 

3. The Capital Budget

Used for large, one-time physical investments, such as construction, renovation, or equipment acquisition. Funders reviewing capital budgets look for evidence of professional planning and risk mitigation.

CategoryItemAmount
Architectural ServicesDesign and Blueprints$25,000.00
Permits and FeesCity and Inspection Costs$7,500.00
ConstructionMaterials and Labor$190,000.00
EquipmentHVAC Systems, Fixtures$28,000.00
Contingency (8%)Unexpected Costs$20,000.00
Total$270,500.00

Including a contingency line item (5–10%) signals maturity. Experienced applicants know that physical projects rarely go exactly as planned. Construction materials fluctuate in price, permitting timelines change, and discoveries during renovation (like outdated wiring) can introduce new work. Building a realistic contingency (and explaining it clearly in your justification) can prevent mid-project crises and reassure funders that you’ve budgeted for the real world, not a best-case scenario.​

For capital campaigns spanning several years, consider adding a separate schedule showing anticipated cash inflows and construction milestones. This demonstrates that you have a plan to manage cash flow, not just total cost, which is particularly important when grants are paid in installments tied to progress.

4. The Capacity Building Budget

Capacity building projects strengthen how your organization works,  not what it does. For example, digitizing your grant management, upgrading a CRM, or training staff in data analytics.

CategoryItemAmount
TechnologyCRM System and Integration$10,000.00
Staff DevelopmentData Analysis Training$5,000.00
EquipmentLaptops and Hardware Upgrades$7,500.00
ContractualIT Consultant (System Migration)$4,000.00
Indirect Costs (10%)Administrative Support$2,650.00
Total$29,150.00

Position these as efficiency multipliers, investments now that unlock savings later. For instance, a $10,000 database improvement may save $50,000 in staff time over three years. In your justification, quantify these benefits where possible: fewer duplicate data entries, faster reporting cycles, improved donor retention, or reduced error rates in financial reports. Funders increasingly value strong data infrastructure because it supports better evaluation and accountability.​

Many capacity-building grants also encourage you to include change management and staff training costs, recognizing that technology alone doesn’t create impact — people need time and support to adopt new tools. Make sure your budget accounts for these “soft costs,” not just software licenses.

5. The Multi-Year “Step-Down” Budget

Multi-year grants typically aim for sustainability. Funders often cover full costs at first, then taper support so the organization gradually absorbs expenses.

CategoryYear 1Year 2Year 3
Personnel$100,000.00$60,000.00$30,000.00
Supplies$10,000.00$6,000.00$4,000.00
Travel$5,000.00$3,000.00$1,500.00
Indirect Costs (10%)$11,500.00$6,900.00$3,500.00
Total Grant Support$126,500.00$75,900.00$39,050.00
Committed Future Revenue$25,000.00$50,000.00

This format proves sustainability by showing how funding responsibility transitions over time — a must for multi-year or foundation exit strategies. In your narrative, connect the “Committed Future Revenue” line to specific sources: multiyear pledges, earned income, fee-for-service growth, or planned individual donor campaigns. Funders look for evidence that you have diversified revenue streams and that your organization will not face a cliff once their support winds down.​

You can also layer in non-cash support like volunteer hours or donated space to further demonstrate long-term viability. Just be sure to follow the funder’s rules on valuing and reporting in-kind contributions. 

Want to create your own grant budget? Out hands-on worksheets have you covered. Click to access them.

7 Best Practices for Grant Budgeting

Even the best-designed forms can falter if the underlying logic is sloppy. Apply these seven best practices before hitting “submit.”

1. Perform a Line-by-Line Review Before Submitting

Print your proposal narrative and budget, and read them side-by-side. Every activity mentioned in the text should have a corresponding financial line. If your program says you’ll host a gala, your budget should show event software, catering, or venue rental. If it’s in the text, it must appear in the budget.

This review is also your best defense against one of the most common reasons proposals are downgraded: inconsistency across application sections. Reviewers quickly notice when the narrative describes two staff positions but the budget lists three, or when the budget includes equipment that is never discussed in the work plan. Build time into your internal workflow for at least one independent reviewer — someone who did not draft the narrative — to perform this cross-check before submission. 

2. Use Real Quotes

Vague estimates breed doubt. Contact vendors for real quotes — even if they’re just written emails. A precise figure like $1,250 shows preparation and legitimacy, whereas $1,000.00 feels rounded and arbitrary.

3. Budget for Data and Technology

Many nonprofits still hide technology under “administrative” or “miscellaneous” lines, but modern funders view tech as a driver of efficiency. Explicitly include systems for data integration, CRM management, and donor engagement platforms. Reliable software enables transparency and reduces future administrative costs.

4. Build in a Reasonable Cushion

A budget can be too lean to succeed. Funders can spot unrealistically small numbers — they signal inexperience or risk. Ensure that your salaries meet industry norms and build buffers for inflation or market price changes. Being conservative is better than being underfunded mid-project.

5. Format for Scannability and Speed

Reviewers analyze dozens of budgets daily. Make their job easy by:

  • Grouping related items under clear sub-headers.
  • Using round numbers when appropriate.
  • Bold totals and use clean decimals (e.g., $10,000 not $9,999.73).

Readable formatting invites confidence — and often, higher review scores.

6. Prove Sustainability with Match Funding

Funders like momentum. Show them they’re not the only ones with skin in the game. Display your in-kind (volunteer time, donated materials) and committed/pending funds from other sources. When others already back your mission, reviewers feel safer joining the cause.

7. Tailor the Budget to the Funder

No two funders think alike. Some foundations prefer supporting new programs, while others invest primarily in infrastructure or capacity building. Review guidelines carefully, and align your cost categories, indirect rates, and phrasing to their expectations, not just your templates.

Wrapping Up

A strong budget is the backbone of a strong proposal. It transforms your grant from a dream into a deliverable plan. By aligning your numbers with your narrative, using real-world costs, and investing in the right tools and infrastructure, you turn the budget from a passive math problem into a persuasive, strategic argument for trust.

Think of your next budget draft as a live test: can someone unfamiliar with your work read your narrative, scan your budget, and clearly see how every dollar moves your outcomes forward? If not, use the discussed review method, refine your justifications, and check that each cost is both reasonable and necessary under your funder’s rules.​

As funding landscapes tighten and reporting expectations grow more complex, organizations that master grant budgeting will stand out not just for compelling stories, but for operational excellence.

Ready to test your draft? Audit your proposal and ensure every goal in your narrative directly connects to a line item in your budget.

Secure Federal Grants with This Complete Audit Checklist

If the thought of a federal grant audit makes your pulse quicken, you’re not alone. For many grant-funded organizations, the process can feel like navigating a maze of regulations, documentation requests, and compliance standards—often under the looming pressure of potential penalties or the dreaded “high-risk grantee” label.

At the center of this complexity lies the OMB’s Uniform Guidance (2 CFR Part 200)—the federal government’s framework for managing grants and ensuring accountability. It governs everything from allowable costs to subrecipient monitoring (more on that later), and it’s the foundation every grant manager must understand before audit season begins.

This article isn’t just another procedural checklist. It’s a strategic guide designed to help you think like an auditor, anticipate problem areas, and confidently demonstrate compliance. Whether you’re preparing for your Single Audit or strengthening your internal controls, this checklist will help you:

  • Gather the right documentation and evidence of compliance
  • Identify and address potential red flags before the auditor does
  • Strengthen financial management systems
  • Reduce the risk of disallowed or questioned costs

By the end, you’ll have a roadmap to turn audit preparation from a source of stress into a strategic advantage—keeping your organization trusted, compliant, and ready to secure future federal funding.

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Federal Grant Audit FAQs 

Navigating a federal grant audit can feel daunting—even for experienced grant managers. To help you prepare, here are key answers to the most frequently asked questions, based on Thompson Grants’ Single Audit Requirements Guide and the OMB’s Uniform Guidance.

What is a Single Audit?

A Single Audit is a comprehensive review that combines a financial statement audit with an assessment of compliance with federal program requirements. According to Thompson Grants’ guide, “A single audit is a rigorous review that combines a financial statement audit with an assessment of compliance with federal program requirements. It is required for any non-federal entity that spends $1 million or more in federal awards during a fiscal year for fiscal years starting Oct. 1, 2024.”

It’s called a “single” audit because it consolidates all of a grantee’s federal programs into one review rather than requiring separate audits for each award. A properly conducted Single Audit helps prevent:

  • Loss of funding
  • Repayment of disallowed or misused funds
  • Heightened audit scrutiny
  • Damage to organizational reputation

Ultimately, the Single Audit ensures public funds are spent responsibly and transparently.

Who is required to have a Single Audit?

As of October 2025, any non-federal entity—including nonprofits, universities, hospitals, and local governments—that expends $750,000 or more in federal awards during a fiscal year must undergo a Single Audit. This threshold will increase to $1 million for fiscal years ending on or after September 30, 2025, reducing the burden on smaller entities while maintaining oversight of larger, higher-risk grantees.

The threshold applies to total federal expenditures, not individual awards. Subawards and pass-through funds all count toward this total.

What’s the difference between a recipient, subrecipient, and contractor?

When a federal agency awards a grant, it places its trust and funds in the hands of the nonprofit, which is officially referred to as the Prime Recipient. This recipient is now 100% accountable for every dollar and every project goal.

However, complex programs are rarely executed by one organization alone. Complex Recipient nonprofits might need to partner with other organizations to deliver services or secure resources.

The moment a recipient decides to pay one of these outside entities with federal grant money, they must make a critical classification. Understanding these functions (and noting them on your audit paperwork) is critical. Here are the roles to remember:

  • Recipient (Prime Recipient): Receives federal funds directly from an agency and is responsible for programmatic and financial compliance.
  • Subrecipient: Receives a subaward from a recipient to carry out part of a program and may also require a Single Audit if their federal expenditures exceed the threshold.
  • Contractor (Vendor): Provides goods or services for the recipient but does not perform programmatic functions. Contractor payments are not subject to Single Audit requirements, though procurement rules still apply.

Misclassifying these relationships is one of the most common Single Audit findings, so ensure your team understands these roles.

How should grantees select an auditor?

Choosing your auditor is one of the most important procurement decisions your organization will make. You aren’t just hiring an accountant to check your math; you are hiring a technical expert to test your compliance with the complex federal regulations. 

Furthermore, a low-quality audit that is late or gets rejected by the government can put your organization in “high-risk” status and jeopardize future funding. A good auditor, on the other hand, can be a vital, long-term partner in strengthening your internal controls.

When selecting an auditor, follow these best practices:

  • Develop a clear statement of work and timeline
  • Issue a formal Request for Proposals (RFP)
  • Evaluate bids based on experience and qualifications—not just price
  • Ensure the auditor is independent and qualified in Single Audits

Also, remember that auditors who have prepared an organization’s indirect cost proposal or cost allocation plan cannot perform the audit due to conflict of interest.

Where and when do I submit my Single Audit Report?

Completed audit reports must be submitted to the General Services Administration’s Federal Audit Clearinghouse (GSA FAC) within the earlier of:

  • 30 days after receiving the auditor’s report, or
  • Nine months after the end of the fiscal year.

Late submissions can delay reimbursements, trigger added scrutiny, or jeopardize future funding eligibility.

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Federal Grant Audit Checklist

Federal Grant Audit Checklist

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Financial & Compliance Documentation

Are financial statements prepared in accordance with GAAP?
Do you have a complete Schedule of Expenditures of Federal Awards (SEFA) that aligns with your general ledger?
Are supporting documents—like invoices, receipts, and contracts—organized and accessible?
Have you documented internal controls to prevent fraud and misuse?
Are all account reconciliations current and reviewed regularly?

Resource Management

Are all costs charged to federal awards allowable, reasonable, and necessary under 2 CFR §200.403?
Can you provide accurate time and effort reports for employees working on federal programs?
Are payroll allocations supported by certifications or system-generated reports?
Do you have a process for reviewing indirect cost rates and ensuring alignment with approved cost allocation plans?

Procurement & Subrecipient Monitoring

Does your procurement policy comply with 2 CFR §200.317–§200.327?
Can you provide records of competitive bids or sole-source justifications?
Have you verified subrecipient eligibility and issued compliant subaward agreements?
Do you monitor subrecipients through reports, site visits, or reviews?
Are there procedures for addressing subrecipient audit findings?

Reporting & Record Retention

Are all financial and performance reports accurate and submitted on time?
Are reports reviewed and reconciled before submission?
Do you retain records for at least three years after final reporting per 2 CFR §200.334?
Are electronic records securely stored with restricted access?

Completing this checklist not only helps you prepare for your next audit—it reinforces sound financial management and positions your organization for continued federal funding success.

Best Practices for Managing Federal Grant Audits 

A checklist is only one part of audit readiness. Long-term success depends on strong systems, clear communication, and an organizational mindset built around compliance.

Best practices for audit readiness (as explained below)

1. Implement a Culture of Compliance

Move beyond “audit season” thinking. Build compliance into daily operations across departments—from finance to program delivery. Maintain current policies, update documentation regularly, stay updated on federal grant news, and discuss compliance as part of routine reviews. Also, ensure your grant management tech is compliant by working with product experts.

When compliance is continuous, you’ll always be audit-ready rather than scrambling at the last minute.

2. Embrace Technology for Efficiency

Manual spreadsheets can’t keep pace with today’s complex grant environment. They are prone to typos, broken formulas, and version-control nightmares. More importantly, they lack the clear audit trail required to show auditors who approved an expense and when. This makes it incredibly difficult to prove you have strong internal controls.

Investing in a dedicated fund accounting or grant management system is a cornerstone of modern grant stewardship. These tools are designed to enforce compliance, streamline the process of tracking expenses by specific grants, prevent staff from accidentally coding a cost to the wrong award, and can generate accurate, real-time reports (like the SEFA).

  • Track expenses by grant
  • Automate reports
  • Flag unallowable costs
  • Centralize key records

This technology isn’t just a time-saver; it’s a tangible demonstration to your auditor that your controls are systematic and reliable.

3. Conduct an Internal Mock Audit

The worst time to find a weakness is when the external auditor is sitting in your office! Conducting a “mock audit” or internal self-assessment several months before the real one is the single best way to ensure a “no surprises” experience. Have a staff member—ideally one who is independent of the day-to-day grant accounting—use the official Compliance Supplement to test a sample of transactions.

Review your procurement files, timekeeping records, and subrecipient monitoring checklists. Are the required documents actually there? Is the math correct? This process gives you invaluable time to identify and implement corrective actions for any issues you find. Walking into an audit with a problem you’ve already identified and started fixing is far better than being caught unaware.

4. Focus on the Human Element

A successful audit depends as much on communication and organization as it does on documentation. Your relationship with your auditor should be professional and transparent, not adversarial. Remember, they are on a tight deadline, and a disorganized client costs them time, which can increase your audit fees and strain the relationship.

The key here is to be proactive. Reach out early to clarify timelines and expectations. When they send the “Prepared by Client” (PBC) list, provide all requested materials promptly and in an organized digital format. Also, if you know there’s a problem (e.g., you discovered a misspent cost), don’t hide it. Disclose it proactively, along with the corrective action plan you’ve already put in place. This transparency builds trust and signals that you are a competent, responsible steward of federal funds.



Preparing for a federal grant audit doesn’t have to be daunting. By understanding the Single Audit process, maintaining organized documentation, and promoting a culture of compliance, your organization can approach audits with confidence.

Audits aren’t just a compliance requirement—they’re an opportunity to demonstrate accountability and strengthen your organization’s reputation.


About the Author

Erin Murphy

Erin Murphy, MBA, is the Vice President of Marketing at Thompson Grants, where she leads strategic initiatives to expand the organization’s reach and impact. She leads initiatives that connect grant professionals with expert guidance, training, and tools designed to simplify compliance and strengthen funding strategies. Erin combines her background in marketing with a passion for supporting nonprofits, governments, and institutions as they navigate the complex world of grants management.

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Mastering Single Audit Requirements: An Essential Guide

If your organization receives a lot of federal funding, here’s something important to know: starting with fiscal years that begin on or after October 1, 2024, any group spending $1 million or more in federal awards will need to undergo a Single Audit (or, in some cases, a program-specific audit).

Think of the Single Audit as a financial “check-up.” It’s designed to make sure federal funds are being used properly and in line with program rules. This applies to a wide range of entities, including states, local governments, nonprofits, universities, and tribes. Federal financial assistance comes in many forms—grants, but also cooperative agreements, loans, commodities, insurance, and more—so it’s worth double-checking how your funding is classified.

Not every organization falls under the requirement (for example, some for-profits and international groups may be exempt), but award agreements will spell out exactly what’s expected. And even if you’re under the $1 million threshold, you still need to maintain good records and be prepared for possible reviews.

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Single Audit Requirements FAQs 

What Is a Single Audit?

A single audit is a rigorous review that combines a financial statement audit with an assessment of compliance with federal program requirements. It is required for any non-federal entity that expends $1 million or more in federal awards during a fiscal year for fiscal years starting Oct. 1, 2024. 

The primary purpose of the single audit is to verify that federal funds are managed properly, spent in accordance with laws and regulations, and that the intended program objectives are met. This process ensures accountability and transparency, helping federal agencies confirm that recipients fulfill their obligations and uphold the integrity of federal programs.

Why Are Single Audits Important?

Single audits are essential for promoting accountability and transparency in the use of federal funds. Failure to complete a required audit can lead to serious consequences, including loss of current or future funding, repayment of improperly used funds, increased audit scrutiny and reputational harm with funders and stakeholders.

Thresholds and Triggers 

The expenditure threshold applies to an organization that expends at least $1 million in total federal funding within a fiscal year, not to each grant individually. This threshold is based on an entity’s fiscal year: 

  • For January–December fiscal years, the rule applies Jan. 1, 2025, onward
  • For July–June fiscal years, July 1, 2025, onward
  • For October–September fiscal years, Oct. 1, 2024, onward. 

Entities should carefully review their fiscal year to determine whether their next audit is subject to the previous $750,000 threshold or the new $1 million requirement.

Who Performs a Single Audit?

A single audit must be conducted by an independent certified public accountant (CPA) with experience in federal grant auditing. The auditor is responsible for reviewing the organization’s financial statements, Schedule of Expenditures of Federal Awards (SEFA), internal controls and compliance with federal requirements. They identify major federal programs, issue findings and submit audit reports. 

Meanwhile, the entity being audited must maintain complete and accurate records, prepare the SEFA, provide access and documentation to the auditor, respond to any findings, and ensure all required reports are submitted promptly to the Federal Audit Clearinghouse (FAC).

Single Audit Requirements to Know

Single audits must meet rigorous federal standards to ensure proper stewardship of federal funds. Key requirements include:

  • Governing Regulations: Audits are conducted under the authority of the Single Audit Act and the Office of Management and Budget’s (OMB) Uniform Guidance. Auditors must also adhere to the annually updated OMB Compliance Supplement, which provides detailed rules for auditors testing specific federal programs for compliance.
  • Scope of the Audit: The audit must cover the entity’s entire financial operations. This includes both a standard financial statement audit and a detailed compliance audit of federal program requirements to ensure funds were spent appropriately.
  •  Major Program Determination: The auditor identifies “major programs” for in-depth testing. This selection is based on total expenditure levels and a risk assessment that considers program complexity, past audit findings and any federal oversight concerns.
  • Schedule of Expenditures of Federal Awards (SEFA): Your organization is responsible for preparing a SEFA, a comprehensive list of all federal awards expended during the fiscal year. This schedule must include Assistance Listing Numbers (ALNs), program names, award amounts and pass-through entity details.
  • Reporting Requirements: The final audit package is a comprehensive collection of documents. It must include the auditor’s opinion on the financial statements, a report on compliance and internal controls, the SEFA, a schedule of findings and questioned costs, and a corrective action plan for any identified issues.
  • Submission Requirements: The complete audit package and a Data Collection Form (DCF) must be submitted to the Federal Audit Clearinghouse (FAC) by the specified deadline. Copies must also be provided to any pass-through entities that awarded subrecipient funding.

Common Single Audit Findings

Understanding the most frequent audit findings can help organizations proactively address potential issues before they become compliance problems. These recurring deficiencies often stem from inadequate preparation, poor internal controls or misunderstanding of federal requirements.

Things that successful single audits can prevent, as explained below.

  • Inaccurate or Incomplete SEFA: The SEFA frequently contains errors such as missing federal awards, incorrect Assistance Listing numbers or unreported subawards to other organizations.
  • Late FAC Submission: Missing the Federal Audit Clearinghouse deadline typically results from delayed auditor work, poor project scheduling or inadequate coordination between the entity and its auditor.
  • Weak Internal Controls: Common control deficiencies include insufficient segregation of duties, undocumented financial processes and inadequate review procedures for federal expenditures.
  • Failure to Meet Program Objectives: Auditors often find spending that’s misaligned with stated program goals or evidence of missed performance milestones and deliverables.
  • Cybersecurity Deficiencies: Organizations frequently struggle with weak access controls, unencrypted sensitive data and inadequate information security policies.

Addressing these areas proactively can significantly reduce audit findings and demonstrate strong stewardship of federal funds.

Best Practices for Preparing for a Single Audit 

Effective preparation for a single audit involves year-round organization, clear roles and diligent documentation. Focusing on a few core best practices will help ensure smoother audits and fewer findings.

Best practices for preparing for a single audit, as explained below.

Establish Strong Internal Controls

Strong internal controls are the backbone of audit readiness. Start by creating clear, written policies and procedures that cover tracking, reporting, and compliance. Designate a single audit coordinator who can serve as the central point of contact and keep everyone aligned. To reduce risk, separate key duties among staff so no single person controls an entire process. Finally, build in regular internal compliance checks to identify and resolve potential issues before they become problems.

Understand All Compliance Requirements

A successful audit starts with knowing the rules that apply to you. Stay informed of relevant regulations by reviewing grant agreements and the most recent OMB Compliance Supplement, which explains compliance requirements in detail. Determine your oversight or cognizant federal agency, since they may have specific requirements. 

Maintain Accurate Financial and Program Records

Strong recordkeeping and effective tech is essential for passing an audit. Use separate accounts or fund codes for each grant, and document every expenditure and approval. Reconcile accounts regularly to catch discrepancies early and confirm that costs are allowable, allocable, and reasonable. For staff working on multiple programs, maintain clear time and effort reports so labor costs are properly supported.

Prepare the SEFA Early

Begin work on your SEFA well ahead of deadlines. List all direct and pass-through awards, including correct Assistance Listing numbers, award amounts, clusters and subrecipient details. Reconcile the SEFA with your general ledger and double-check for common errors like missing awards or incorrect numbers to avoid findings.

Use Thompson Grants’ Compliance Alerts

Written by leading experts in auditing, Thompson Grants’ Single Audit Information Service Module is the most extensive and easy-to-use guide of its kind that delivers detailed analyses of every aspect of single audit requirements and procedures, ranging from determining major programs, procuring an auditor, reviewing auditee reports, conducting site visits, and preparing auditor findings.

Wrapping Up

Preparing for a single audit doesn’t have to be overwhelming when you have the right strategies in place. By establishing strong internal controls, understanding compliance requirements, maintaining accurate financial records, preparing your SEFA early and leveraging Thompson Grants’ specialized compliance information, your organization can navigate the audit process with confidence. 

Start by reviewing your current processes to identify areas for improvement, then implement systematic changes that strengthen your compliance framework year-round. Take advantage of available resources, expert guidance and compliance tools to ensure your organization is audit-ready. With proper preparation and the right support, you can transform single audit compliance from a challenge into a demonstration of your organization’s commitment to responsible stewardship of federal funds.

You’ve got federal funds—we’ve got your back. Join the Single Audit Information Service and turn compliance from stressful to second nature. Click to start your trial.

About the Author

Erin Murphy

Erin Murphy, MBA, is the Vice President of Marketing at Thompson Grants, where she leads strategic initiatives to expand the organization’s reach and impact. She leads initiatives that connect grant professionals with expert guidance, training, and tools designed to simplify compliance and strengthen funding strategies. Erin combines her background in marketing with a passion for supporting nonprofits, governments, and institutions as they navigate the complex world of grants management.